Some sense in sensory deprivation

How would you cope if you couldn’t hear, see or feel anything? How do sensory systems react when they have no information to process? Such questions may seem rather bizarre, but they are in fact the topic of sensory deprivation research. Sensory deprivation involves systematically preventing information from reaching one or more sensory modalities. As a research methodology it has a long and chequered history.

Some early sensory deprivation studies were funded by the CIA with the purpose of identifying effective methods of interrogation (1, 2). Such experiments involved attempts to completely remove all sensory information from an individual. Participants were left for long periods in secluded, sound-proofed rooms, wearing cardboard sleeves to reduce tactile stimulation and goggles to reduce visual stimulation. For the unfortunate participants, the consequences of being exposed to these conditions were often hallucinations, anxiety and mental deterioration. The extent of the volunteers suffering was such that they were (eventually) paid compensation in recognition of their maltreatment. Indeed the controversy surrounding these sorts of experiments led to the introduction of stricter ethical guidelines to prevent unwitting participants of behavioural research being exposed to potential harm or distress (1).

Although these early, total sensory deprivation experiments were clearly unacceptable, more subtle forms of sensory deprivation are still used in human research. Sensory deprivation can, if implemented correctly, reveal important information about the functioning of the nervous system without causing any harm to those participating in the research. One example of the positive use of sensory deprivation concerns its role in improving our understanding of tinnitus. Back in the 1950s it was discovered that people with normal hearing often began to experience hallucinatory sounds similar to tinnitus if they were left in a silent, sound-proofed room (3). This finding led to the idea that hearing loss may contribute to the development of tinnitus. However, most tinnitus sufferers do not exhibit the sort of total hearing loss that is mimicked by a silent, sound-proofed room. Indeed some tinnitus sufferers demonstrate very good hearing! It appears therefore that processes other than hearing loss must be involved in the development of tinnitus.

Modern theories of tinnitus point the finger at the process of homeostatic plasticity; the mechanism by which the equilibrium of neurological systems is maintained through adjustments made to physiological processes (4). In the same way that a thermostat alters the activity of a heating system to maintain a certain temperature, it is thought that the brain modifies the degree of spontaneous firing within neuronal populations in order to maintain a consistent level of activity. In response to damage to the auditory nerve, homeostatic plasticity may cause the brain to implement a ‘gain’ to ongoing spontaneous activity within the auditory system. While this gain may serve to reduce, or even remove, the impact that nerve damage has on hearing ability, it may also induce tinnitus by elevating baseline neural activity to a level that is similar to that evoked by genuine sounds (4).

Scientists funded by the British Tinnitus Association recently used a more refined sensory deprivation methodology to test whether homeostatic plasticity may contribute to tinnitus (5). 18 participants were asked to wear an earplug in one ear for a week. The earplug was specially designed to mimic the sort of high-frequency hearing loss that commonly occurs due to old age or noise damage. Altering the input in just one ear not only minimised the inconvenience for participants, it also allowed the effects of the auditory deprivation to be ethically tested over a far longer period than would otherwise be possible with more substantial deprivation. The methodology therefore provided a far more naturalistic assessment of the effects of hearing loss on the auditory system.

14 of the 18 participants reported experiencing hallucinatory sounds during the week, with most of the sounds taking a form similar to those experienced in tinnitus. This confirmed that real-life forms of hearing loss are capable of inducing tinnitus-like symptoms. Crucially, the pitch of the hallucinated sounds matched the frequency spectrum of the deprivation induced by the earplugs; selective loss of hearing for high frequencies produced mainly high frequency hallucinatory sounds. As the type of hearing loss induced in this study should only provoke homeostatic changes in neuronal populations that process high frequency sounds, this finding supports the idea that homeostatic plasticity contributes to the development of tinnitus.

Despite its somewhat inglorious history, sensory deprivation remains an extremely important methodological tool. By removing the influence of external stimuli, sensory deprivation provides a clearer view of the workings of internally-driven neurological processes such as homeostatic plasticity. As neurological disorders are often characterised by dysfunctions in these internal processes, sensory deprivation studies can provide invaluable insight into the causes of such disorders.

More information about research into the causes of tinnitus is available at


(1) McCoy, A.W. (2007) Science in Dachau’s shadow: Hebb, Beecher and the development of CIA Psychological torture and modern medical Ethics. Journal of the History of the Behavioral Sciences, Vol. 43(4), 401–417. <Link>

(2) Klein, N. (2007). The shock doctrine : the rise of disaster capitalism (1st ed. ed.). New York: Metropolitan Books/Henry Holt. <Link>

(3) Heller, M.F. & Bergman, M. (1953). Tinnitus Aurium in normally hearing persons. The Annals of Otology, Rhinology and Laryngology, 62 (1), 73-83 <Link>

(4) Schaette R, Kempter R (2006) Development of tinnitus-related neuronal hyperactivity through homeostatic plasticity after hearing loss: a computational model. Eur J Neurosci 23: 3124–3138. <Link>

(5) Schaette R, Turtle C, Munro KJ (2012) Reversible Induction of Phantom Auditory Sensations through Simulated Unilateral Hearing Loss. PLoS ONE 7(6): e35238. doi:10.1371/journal.pone.0035238 <Link>

A Child’s Curiosity

“What is gravity?” asks my then four year old nephew to his family.
Quite an inspirational question from a four year old! But then again, at the time they were all watching the highly acclaimed Cosmos; the science documentary hosted by Neil deGrasse Tyson. A child’s curiosity clearly knows no bounds when it comes to the world around them, and I am astounded by the equally captivating questions his brother asks me (“What does e in math[s] mean?”)
It is sad that in later years children eventually lose their interest in science. In 2008, The Telegraph published a report with statistics that showed some children were losing their interest between primary and secondary school (42% of 9 year olds were interested in science, but this drops to 38% of 12 year olds and 35% of 14 year olds). In 2013 Ofsted reported an assessment of science education and recommendations based on a survey [Maintaining curiosity: a survey into science education in schools] conducted between 2010 -2013. CaSE in London responded positively to this report and has called for the UK Government to heed these recommendations.

I had the chance to observe such inspirational curiosity during my Easter holidays when I visited my cousin and her children (hereafter referred to as my niece and nephews) in Boston, centre of scientific excellence. It really doesn’t get any better than that! One of the things I was particularly looking forward to was extracting DNA from strawberries with them. I had of course previously done this with Science Brainwaves at a school outreach event in 2011. Just telling my 11 year old niece and 9 year old nephew about this got them really excited. When I told them their dining table needed to be cleaned, my nephew (who prefers to kick a football around the house much to his parents’ disapproval) was so eager that he could not clean the table fast enough! I complemented this little experiment with a brief 101 on DNA and PCR (polymerase chain reaction, which copies DNA). When I interviewed them later about it, they told me they loved it and would gladly do it again. Score 1 for science! If doing practical experiments benefits children so much, then it certainly makes the removal of practical work for A’ Level exams by Ofqual in the UK dubious. Naturally, this move has been criticised and on the 12th May 2014, a hearing was hosted by the Commons Select Committee to discuss this proposal.

I also had the opportunity to visit some of the scientific attractions of Boston with the kids; the New England Aquarium and the Museum of Science. I found that the trip to the aquarium was definitely worthwhile. My nephew had his own epiphany linking the ecology of sharks and their prey to the food web, as he dictated later in the evening. I was amazed and a little scared when I had the chance to touch stingrays and a baby shark in the giant ‘touch-tank’. But I wasn’t the only one in seventh heaven. It was interesting to find out that my niece actually wants to be marine biologist. Score 2 for science. I asked my 9 year old nephew what he wanted to do and he replied with a list of potential careers: archaeologist, cosmologist or footballer. I was completely honest with him when I said that he might make more money becoming a footballer, there probably won’t be very much opportunities in archaeology, but that cosmology might be more fulfilling. He didn’t seem too upset or waylaid by this. I neglected to ask the youngest, as at the time he was 4 years old and most of his ambitions included chocolate and tickling. I will ask him another time.

When it comes to their parents encouraging them into science, my cousin and her husband do not hold back! Amazed by my nephew’s questions, the family is now subscribed to the Scientific American and together they all sit down to watch Cosmos. This documentary, playing on Fox and National Geographic, follows on from the Carl Sagan version which played in 1980. I watched the second [Some of the Things That Molecules Do] and fourth [A Sky Full of Ghosts] episodes, glad that the second episode provided a neat and tidy introduction to genetics and evolution, the ideal precursor to extracting DNA from strawberries. I was really astounded at how the show pitched itself perfectly to both adults and children. The parents and all three kids were glued to the screen, and I found the balance between explanation and visuals in complete harmony. But of course, a documentary like this does not go unnoticed by the Creationists in the USA, especially when evolution is involved. In an article in the Huffington Post, the show was criticised by Creationists for not given its due time on Creationism. I asked my niece and nephew what they thought and they make the same claims as any scientist would make: Why give inaccurate information to the public, especially when there is evidence to back up what we already know? Score 3 for science.

For the final flourish in this scientific journey with my niece and nephew I tell them I write a monthly blog for Science Brainwaves. So I asked them to read Resurrection! Bringing species back from the dead, and get their thoughts and feedback. They both would like to see the sabre tooth cat brought back (clearly indicating they have not seen Jurassic Park). My niece is for bringing back species from the dead as she thinks it will make great study material. My nephew on the other hand is a lot more cautious. I don’t think I can score this as either for or against science, but I’m definitely happy to see this younger generation at least considering the ethical options. Either way, the final score is 3 for science, I’m still the Cool Fun Aunt and now I can happily watch and nurture their scientific ambitions to reality.


DNA Extraction

Doing DNA extraction with my niece and nephew


The touch tank at the New England Aquarium


Interbreeding humans: The Sassy Palaeolithic Action

Are you confused about the different types of humans that got it on with each other?
If you are, then in this blog entry, I provide a summary factsheet style of the pairs of hominids that interbred with each other, with evidence for and against it, and the current conclusion. All dates are expressed as years before present, and be aware that in the field of ancient DNA, human contamination is always an issue that can potentially confound the results.

Hominid Action Pair #1:     Neanderthals     +        Humans: Non-Africans
Home-turf:                            Europe/Asia                         Global
Lived from:                        400,000 – 30,000             200,000- present
When and where:                     47,000-65,000 Middle East
Evidence for getting it on: FORinterbreedingIf the different colours represent different genetic make-up, then the answer to the question “Where did the modern humans get their genes from?” can only be “from mating with Neanderthals”.

Evidence against getting it on: AGAINSTintebreedingThis model clearly produces the same pattern but without mating.

Current status: The literature arguing against interbreeding has been focused on the pitfalls of the method used. Nevertheless, new methods are now confirming that Neanderthals and humans were up in a tree K.I.S.S.I.N.G. Now, we are starting to identify what genes we got from them.


Hominid Action Pair #2:         Denisovans      +      Humans: Asians/ Oceanians
Home-turf:                           Siberia (Tropics?)                       Oceania
Lived from:                            ? – ~50,000                       200,000- present
When and where:                      S.E Asia and prior to 44,000
Evidence for getting it on: It’s the same case as the evidence for mating between Neanderthals and humans, except here the genes that went into the ancestral populations of the Aboriginal Australians, Near Oceanians, Polynesians, Fijians, East Indonesians, and Philippine Mamanwas and Manobos can only have come from the Denisovans.
Evidence against getting it on: While models are presented in the literature for discussion, they have been argued against. The consequence of which is that the results are described as a best fit to the data.
Current Status: We know that the action took place BUT we don’t know enough about the Denisovans. We only have a tooth and small finger bone from a Siberian cave. Watch this space!


Hominid Action Pair #3:              Denisovans       +         Homo erectus?
Home-turf:                              Siberia (Tropics?)        Africa, China, Indonesia
Lived from:                                 ? – ~50,000               1.9 million years- 150,000
When and where:                                         ? and Asia?
Evidence for getting it on: The Denisovan tooth has some features that you can find in some of the older Homo species, and the DNA appears to also look quite archaic. Homo erectus was widespread across Asia, so it does seem likely that the two hominids crossed paths.
Evidence against getting it on: At the minute, there isn’t any. This model was proposed as the most likely scenario to a result that arose from another study.
Current Status: As already said before, we don’t know that much about the Denisovans. There are still a lot of gaps making this a hypothesis.


Hominid Action Pair #4:             Neanderthals        +       Denisovans
Home-turf:                                    Europe/Asia              Siberia (Tropics?)
Lived from:                                400,000 – 30,000              ? – ~50,000
When and where:                                    ? and Europe/Asia?
Evidence for getting it on: NeintoDeEvidence against getting it on: Not presented.
Current Status: This has just recently been published, and the amount of DNA material from the Neanderthals into the Denisovans is calculated to have been very small. More analyses will have to be done.


Here is a final tree summarising the relationships between the hominids, and the arrows indicate where interbreeding took place. Adapted from Prufer et al 2014.

SummaryWhile I used a lot of literature to create the above summary, if you are looking for more information then I recommend Veeramah and Hammer 2014, Nature Reviews Genetics 15, 149-162 as it provides an up to date informative review while also including relevant references.

Resurrection! Bringing extinct species back from the dead

My best friend has nightmares about dinosaurs; T. rexes chasing and searching for her as she hides behind furniture. I don’t blame her. Courtesy of Jurassic Park, I’m sure there are plenty of others who have had similar nightmares. During my PhD, I once had a nightmare that Neanderthals were back and trying to take over Europe. But is it really possible to bring back species from the dead?

At first glance, it seems to be more difficult than the movies give credit for. In 2009, the New Scientist published an article outlining the method for any Dr Moreau wannabes, but also why the technology is not available for it to work:   

1- Obtain a complete and accurate genome

2- Package and assemble this genome into chromosomes

3- Identify a suitable surrogate to provide the egg and to gestate the embryo to full term

But as technology is moving at a face pace the limits of scientific accomplishments are being further tested. Revive and Restore is a project aiming to push the boundaries for resurrecting extinct species. Inspiration for this project came when the last passenger pigeon (a species hunted to extinction for its meat) named Martha died in Cincinnati Zoo in 1914. Several species have since been chosen as candidates to be resurrected, including a range of birds, the quagga, the Easter Island palm and several Pleistocene mammals. The first meeting held on the 8 February 2012 brought together conservation biologists and geneticists to assess the feasibility of resurrection. Since then the project has established a list of criteria to examine the suitability of each candidate species, e.g. how will bringing back the species answer scientific questions, is it possible to re-wild a species and, if selecting a species further back in time, is there enough preserved DNA. Sure enough in 2013 an article What If Extinction Is Not Forever? appeared in Science discussing the risks versus the benefits. The objections fell into five categories: animal welfare, health, environment, political and moral, and the benefits included: scientific knowledge, technological advancement, environmental benefits, justice and the “cool” aspect of it.

One of the reasons why the passenger pigeon was selected is because there are plenty of samples that are young enough to obtain good quality DNA. The key issue therefore lies in the survivability of ancient DNA sequences. The potential rests firstly in obtaining increasingly older DNA sequences and secondly, ensuring that the genome is of high quality. The oldest DNA sequence obtained to date is the 700,000 year old horse genome from Canada, a far cry from what was once an hypothesised maximum of 100,000 years old (Shapiro and Hofreiter, 2014). Sequencing technologies have also drastically increased genome coverage (how many times a gene is “read” a bit like each time you re-read a book you pick up on more information and with better accuracy). The Denisovan genome, for instance, before the use of the new sequencing technology enabled a coverage of 1.9 fold, which increased dramatically to 30 fold once the new techniques were applied. Nevertheless even with the new technology to analyse fragmented DNA, Shapiro and Hofreiter (2014, p. 1236573-2) state “it may not be possible to sequence any eukaryotic palaeogenome truly to completion”- a sad case indeed for the 11 year old boy who once asked me at a Science Brainwaves workshop “can we bring monsters back?” Assuming he meant dinosaurs and without getting into the logistics with him, I gave him the theoretical but not entirely true response of ‘yes’. He then exclaimed “COOL” really loudly and wondered off. To be honest, I didn’t really want to break his heart, and I may just have inspired him to become a scientist! A similar question was posed (in a considerably much more professional manner) at the Royal Society meeting in London Ancient DNA: the first three decades in November 2013. Towards the end of the talk The Future of aDNA by Professor Michael Hofreiter, a colleague from UCL asked “can we reconstitute from ancient DNA (putting aside the technical details) a viable sequence to create a viable organism?” The answer was a resounding no. When it came to resurrecting dinosaurs, Professor Hofreiter quite clearly stated that the field of ancient DNA will never be able to go that far back in time. With an added flourish came the phrase “don’t waste your time or money!”

So should we be worried about dinosaurs chasing us, or Neanderthals taking over? With the advancement of technology opening up the possibility of resurrection, it is only those that have not been extinct for very long that could be resurrected, such as the dodo or the passenger pigeon. The debate on this however continues: It is through this approach that together scientists, policy-makers and the public can work together to ensure that this new science is used in a mature and sensible way. As for my best friend, she is relieved and hasn’t had a dinosaur nightmare since.

Jurassic Park, copyright IMDB Universal Pictures 2012

Jurassic Park, copyright IMDB Universal Pictures 2012

Animal intelligence.

I have covered a wide range of topics throughout my Biomedical Science degree: but one thing that really sparks my interest that isn’t really biomed related are studies involving animal behaviour.
Animal rights have recently been a hot topic, especially due to the viral article recently informing about the dolphin killing ritual in the Faroe Islands, which have shocked many. One main reason underlying animal cruelty may be because their value is often under appreciated, their intelligence overlooked, as it is not apparently obvious. Animals are able to show emotions and even compassion for their own species, as well as inter-species.
Whether it’s little zebra fish showing aggressive behaviour with a mirror test, or elephants for their caring behaviours, all sorts of animals are capable of actions that are similar to many types of human emotional behaviour.

Everyday birds that are seen as an annoyance on the streets, for example pigeons are often underrated for their abilities, normally as they are viewed as vermin. A well-known instinct is for very accurate homing ability. This ability may be due to their sense of smell, by spatially mapping ‘olfactory positions’ of locations, or past suggestions of magnetic field detection, a theory less well received.
Pigeons can also show other characteristics e.g. choosing a preference of two options, tested with a string test using a touchscreen:

pigeon touchscreen
The test involved choosing between string attached to an empty animated box (red string), and a box that looked like it had food in it (green). This demonstrated pigeon’s ability to learn, and make associations with a preference and food reward.
They are also able to pass the mirror test as they have the ability to recognise their own reflection. However this is being argued against, as the pigeons in the original experiments were trained to respond to a mirror. Although simple, passing these tests shows a lot of potential.

Crows are able to take certain faces that are associated with negative emotion/danger to memory, and other crows are called to the proximity to learn and ‘mob’ the dangerous face. These memories may last a lifetime, so are able to spread widely in the community through social learning.
Other such species, like primates and cetaceans are fairly well known for their ability to shown complex behaviours.

Capuchin monkeys are known for displaying playful and lively behaviours to attract a mate. A recent amusing article has shown how females can be seen throwing stones at males, as a form of ‘flirtatious’ behaviour. It is one of the only ways they can attract a mate, as there is no physical characteristics shown in this species before copulation. For males, it is much easier; rubbing their bodies with urine is effective in attracting females.
Dolphins are able to show complex behaviours, e.g. being able to communicate through their own series of clicking/whistle sounds, each having different interpretations. Another very interesting learnt behaviour is protecting their young’s snout with a sponge, when teaching foraging techniques. Although, recently people have started to consider whether they are really as smart as they are put up to be, as they can show some of the same social characteristics as chickens e.g. roaming in large groups, empathetic responses, so may be on the same intelligence wavelength, which in my opinion should not be any more of a reason for their abuse. This had lead to suggestions, which I do agree on, that animals should be appreciated for their different types of intelligence, rather than put on a hierarchy- type scale.

This may rule out possible ‘classification’ of dolphins as ‘non-human persons’. The Cetacean family, to which whales and dolphins belong, are highly respected due to their complex intelligence, to the extent that some countries decided to ban captivity, and the use of dolphins for entertainment purposes, as their intelligence is up to the level that they could have the same rights as a ‘non human person’.

In many species of varying family and size, there is an abundance of complex behaviours that are analogous to human behaviours, some being a caring thought, to heart-wrenching empathy behaviour, even towards other species.
With many different animals, research and analysis will continually reveal that there is more than meets the eye. Behaviour is a very complex topic, with opinions coming from many different perspectives, leading to differing definitions of the term intelligent.

Image taken is a screenshot from video: TrendVideos32. 2013. Pigeons master touchscreen intelligence test. [Accessed 06 Feb 2014] from:

Science on the Origin of Life

Since the dawn of civilisation and the dreaming up of our early creation myths, the philosophical and scientific debate of the origin of life has enchanted people worldwide. Since the thousands of years when early man prayed to sky gods have we got any closer from determining how life originated on earth? And can we even prove any of the theories through the scientific method?

The most widely held theory is that of abiogenesis. This is the idea that the conditions present on early earth when life was beginning, such as the electrical activity and dense atmosphere, resulted in the spontaneous creation of the building blocks of life. When these early conditions were replicated in the lab, in the iconic Urey-Miller experiment of 1953, some ingredients for life, such as amino acids, were seen.

The one major problem with this theory is that just as in cooking, adding the ingredients together doesn’t automatically make the meal. Life is amazingly complex and intricate. Having the building blocks doesn’t account for how they organised themselves into the patterns that can be call life.
Scientists are working to fill in this gap, producing theories based on the original abiogenesis. These ideas attempt to explain how order was achieved. These include the Deep Sea Vent hypothesis, the Coenzyme and RNA world hypothesis, and the Iron-Sulfur World theory. Other theories stray away from the abiogenesis idea, such as Autocatalysis Clay hypothesis, Gold’s “Deep-Hot Biosphere” model, Lipid world and Polyphosphates, to name a few.

One theory looks beyond the earth for the origin of life. This is known as panspermia, the theory that life originated in space. The main proof behind the theory is the presence of dead microbes and fossils found in debris in the stratosphere. However this evidence has faced harsh criticism from the scientific world.

There are many questions yet to be answered by Panspermia. In the theory, life, in the form of microbes, came to earth piggybacking on meteors and asteroids. How did the microbes survive the harsh conditions of space, and the harsher conditions whilst entering or exiting the atmosphere? Where did they come from? How did they then survive on a barren planet enough to divide and evolve? This theory doesn’t really solve the fundamental question of where life originated, but it does extend the time for which life can form over. In the history of the universe, earth is relatively new.
Science is yet to form a watertight theory on the origin in life, and there is question if it ever will. The many different ideas debate over which is the closest to what events occurred millions of years ago. Without concrete evidence all we can do is continue to develop these ideas based on theories and assumptions.

Neolithic Revolution in the air!

THE NEOLITHIC REVOLUTION WAS A KEY MOMENT IN THE PREHISTORY OF HUMANS. It sparked civilisation as we know it- settlements were established, crops were grown and animals were domesticated transforming the economy of subsistence globally. Beginning in the Levant (Near East) around 12,000 years ago, the Neolithic Revolution spread into Europe 8000 years ago and lasted up until 4000 years ago when the Bronze Age began.

The major question is how did this revolution spread? Did the indigenous hunter gatherers adopt farming solely though cultural transmission? Or did the farmers pass on their practices alongside their genes? These two models (see diagram) – culturally diffused model (CDM) and demic diffused model (DDM) – originally seen as two polar opposites as mechanisms of the spread, have been debated throughout the 20th century. By identifying the proportion of Mesolithic/ hunter-gatherer and Neolithic/ farmer genes within the current gene pool (see diagram), the correct model could be identified.

Classical genetic markers in present day populations (such as blood groups) appear to lend support to the DDM revealing a genetic cline from the Near East towards the West. But modern genetic markers can reflect population processes that have taken place both before and after the Neolithic spread. Instead ancient DNA (aDNA) provides a unique window of opportunity to look back into the past. Ancient DNA studies do come fraught with difficulties. Over time DNA degrades and fragments into short molecules. Usually this means any contaminating modern DNA is favourably extracted and analysed instead. Nevertheless strict and rigorous protocols exist to minimise contamination and new technology has been optimised for aDNA extraction.

The archaeological record has shown that as farmers migrated across Europe, two different routes were taken as indicated by distinct ceramic styles. One route was through Central Europe, from Hungary to Slovakia, Ukraine and through to Paris, as shown by the Linearbandkeramik (LBK) and Alföldi Vonaldiszes Kerámia (AVK) pottery styles. The other route represented with Impressed Ware/Cardial culture was along the Mediterranean coast. aDNA studies have been conducted on samples from these different sites and cultures, and the picture that emerges is one more complex than just picking one model over the other. It certainly appears that the two routes have their own model: while the Central Europe/ LBK route shows little to no genetic continuity between the Mesolithic hunter-gatherers and the Neolithic farmers, the Mediterranean route tends towards genetic continuity and therefore a level of gene flow between the two populations, a pattern which even seems to lead up into Sweden.

But this most certainly is not the end of the story. For one thing, the genetic studies carried out were analysing the mitochondrial DNA (mtDNA), which is inherited solely down the female line (men inherit their mothers’ mitochondrial DNA but will not pass it on). In one study, it was found that of Spainish Neolithic samples while the mtDNA belonged to hunter gatherer groups from the Palaeolithic, the Y chromosome was shown to be from the Neolithic Near East. This does seem to suggest that the role of men and women during the advance of the Neolithic differed to some extent. Additionally, it also appears that the change to farming practices did not happen as rapidly as expected, and was not as clear cut. In two recent papers (with a particular focus on Germany), it was found that hunter gatherers and farmers lived alongside each other for about 2000 years and, interestingly while the Mesolithic hunter gatherers and the Neolithic farmers had their own distinctive gene pools, at some point in the Neolithic there were intermediary groups with shared ancestry and lifestyle undoubtedly reflecting the transition that was taking place.

There is a level of difficulty when studying the past; we cannot always state processes or cause and effects with a perfect degree of certainty, but we can say what the evidence appears to suggest, and in this case it appears to suggest a high a degree of complexity as the Neolithic Revolution took hold. There is never just any one specific model that can answer our questions, and there will always be other lines of evidence to explore. To answer the original question how the Neolithic Revolution spread cannot be placated with just one simple answer. It is never that easy. But as aDNA analyses show, we can still get one step closer to that very complicated answer.

More information:

Bollongino et al 2013 Science 342 (6157) 479-481

Brandt et al 2013 Science 342 (6155) 257-261

Gamba et al 2011 Molecular Ecology 21 (1) 45-56

Haak et al 2005 Science 310 (5750) 1016-1018

Lacan et al 2011 PNAS 108 (45) 18255–18259

Pinhasi et al 2012 Trends in Genetics 28 (10) 496-505

Skoglund et al 2012 Science 336 (6080) 466-469Neolithic Revolution




Reproduction Revamp: Stick Insects and Going It Alone.


Timema cristinae: making a lack of a love life cool.

Love can be tough. If you wish awkward dates and trawling through were a thing of the past, you could take a leaf out of this stick insect’s book. Tanja Schwander (University of Lausanne) studies how Timema stick insects are changing the dating game. Rather than reproducing with a partner, female Timema have developed the ability to produce offspring individually.  There could be a number of causes for this bizarre transition from sexual to non-sexual offspring production, so read on for a how-to guide in ditching dating.

Conversion to non-sexual reproduction may occur genetically. When female Timema are prevented from mating, some eggs that haven’t been fertilised by sperm hatch and develop. Could this virgin birth scenario, reminiscent of biblical times, replace sexual reproduction in Timema? Or are virgin births merely a strategy to ensure female stick insects can carry on their line when opportunities to mate are thin on the ground?

Alternatively, a type of bacterial infection may stimulate non-sexual reproduction. Infecting bacteria are only transmitted through the female sex cell, the egg, and so males slow the spread of the bacteria. In light of this, the bacteria devised a cunning strategy to eliminate males: inducing a kind of non-sexual reproduction that produces only female offspring. Could bacterial infection be the instigator of non-sexual reproduction?

Schwander’s studies of genetic data reveal the virgin birth scenario cannot explain the change in Timema reproduction. Conversion to non-sexual reproduction may occur genetically, but not via virgin births. To determine if bacterial infection causes the stick insect’s lack of libido, Schwander cured the infection. This restored sexual reproduction and production of male offspring, proving bacterial infection can result in non-sexual reproduction. Watch this space; could Boots’ next bestseller be bacteria to eliminate human males?

The rise and fall of the slasher dinosaur

Almost every child goes through a dinosaur phase. In some cases, it’s a frenzied week of roaring and leaving spiky plastic models all over the floor, before a combination of sore feet and a sore throat drive you onto the next stage of development. In my case, it lasted about 5 years. I owned sacks of dinosaur toys, a library’s worth of dinosaur books, and irritated my friends by criticising the accuracy of their dinosaur games (You can’t play with a dinosaur from the Creataceous and a dinosaur from the Jurassic at the same time. You just cannot.) Eventually, peer pressure made me decide that dinosaurs were for little kids, and I forgot about them for a decade or so.

But last year, I took a module in Palaeobiology– the study of extinct organisms– as part of my degree. I was back in the realm of dinosaurs– older, wiser but still embarrassingly excited. Then as I delved deeper into my external reading, I found some papers that shook my world, shattered my dreams, and generally slapped my childhood in the face. My dinosaur books had been lying to me about my favourite dinosaur of all time: Deinonychus.

Deinonychus (pronounced Die-NON-ik-uss) was a mean guy. Resembling its smaller, superstar cousin the Velociraptor, Deinonychus nonetheless has its own claims to fame.

This particular specimen is a bit of a deviant, judging by his facial expression and his public nudity (we now know that Deinonychus probably had feathers)

This guy has a far more modern dress-sense

Before the 1960s, scientists took a pretty dim view of dinosaurs. The consensus was that they were all stupid, sluggish and cold-blooded, and probably died out because they couldn’t cope with the same challenges that we sleek, sexy mammals can. But that view started to fall apart when John Ostrom took a closer look at Deinonychus. He suggested that these animals were speedy, intelligent pack-hunters who worked together to bring down large prey, using the fearsome sickle-shaped claw on each foot to disembowel their victims. Like wolves. Slashy Captain Hook wolves. This image of Deinonychus helped create a revolution in the way that we think about dinosaurs, and it was still championed in all my dinosaur books. As the sort of child who didn’t bat an eyelid at the bloodiest scenes of Watership Down, it inspired me. Over several years, I built up a portfolio of really creepy drawings of dinosaurs killing each other, made with nothing but a pencil and a red felt-tip pen, and ravaging packs of Deinonychus featured heavily in my “art”. On reflection, I feel lucky that my parents didn’t refer me to a child psychologist.

But in 2006, long after I’d abandoned dinosaurs in favour of blushing at teenage boys, some scientists decided to test out the theories about those fearsome feet. Phillip Manning and his team built an accurate hydraulic model of a Deinonychus leg, complete with terror-claw, and made it kick a pig carcass that had kindly volunteered to play the part of an herbivorous dinosaur. Yet far from slicing the carcass into ribbons of sandwich ham, the claws were AWFUL at doing any sort of tearing damage. Instead, they created small shallow puncture wounds that did very little to the surrounding tissue, let alone the internal organs. Not so much a river of blood and gore, then: if Deinonychus behaved like my books said, then the herbivores probably walked away with mildly painful wounds that cleared up in a week. Something else was going on with these bizarre claws. Stumped, Manning suggested that Deinonychus could have used its claws like crampons, allowing it to climb onto the backs of large prey and attack from there. So my vision of dramatic battles between massive herbivores and a fearsome pack of predators wasn’t totally shattered… yet.

It was thanks to a guy called Denver Fowler that my artwork really faded into fantasy. He noticed that modern eagles and hawks—known as raptors—also have one claw bigger than the other on their feet. However, you’ll never see a pack of eagles descending onto a cow in a field and slashing it to death, neither do they need climbing aids. These birds hunt by swooping onto smaller animals, then pick them to bits with their beaks, often while the prey is still alive. A struggling animal could be very dangerous to a bird of prey, potentially breaking its fragile bones, so it’s vital for the raptor to keep it pinned down firmly. This is where that claw comes in. By clamping down with their powerful modified talon, raptors immobilise their prey, allowing them to concentrate on their (very fresh) meal without distraction. Fowler compared the feet of raptors with those of their ancient cousin, Deinonychus, and found many similarities in their anatomy. The flexibility of the toe bearing that large claw may have come in handy not for delivering slashes… but for swivelling down into a death grip on small prey. That’s right—small prey. Those epic clashes I’d envisioned between huge herbivores and fierce little predators seemed less and less feasible.

So how did Deinonychus ACTUALLY live? Fowler envisions a solitary predator that pursued animals smaller or similar to its own size at high speed. It would then pounce on top of its victim and press it firmly to the ground, channelling its bodyweight through the tip of the powerful sickle-claws to prevent escape.  Then it would have leaned forward and proceeded to rip its squirming dinner into bitesize chunks—gory, but not quite the image I’d held. Fowler hadn’t gone as far as to demonstrate that my favourite dinosaur was a peaceful vegetarian, but I have to admit—he’d stolen just a little bit of its badassery. This doesn’t mean Deinonychus stops being cool, though. In fact, it could teach us a lot about the early days of its modern relatives: the birds.

Fowler compared modern raptors with Deinonychus once more, and noticed how, when perching on struggling prey, raptors often beat their wings vigorously. This keeps the bird in a prime position on top of the prey, making sure its victim stays pressed to the ground. We’ve known for a while that many predatory dinosaurs like Deinonychus had feathers on their skin– perhaps the first chink to appear in their armour of terror. But scientists have long argued about how the particular lineage of feathery dinosaurs that evolved into birds first developed the “flight stroke”—the special high-powered downbeat of the wings that creates lift. Looking at Deinonychus inspired Fowler to come up with a new theory. If dinosaurs also stability-flapped their feathered arms when making a kill, over the generations, it could have selected for greater upper body strength and the ability to beat the arms hard and fast– features that would later come in very useful when their descendants took to the air. Although Deinonychus was not a direct ancestor of birds—it appeared long after the first flying dinosaurs—it was closely related to them, so it’s likely that they shared similar behaviour. So by looking at how Deinonychus might have hunted, we can take steps in unravelling one of the biggest, most controversial mysteries in all of Palaeobiology.

In future, then, perhaps we’ll look back on Deinonychus as triggering a second revolution in how we see the dinosaurs. If I told that to my 7-year-old self, I hope she’d have been consoled. Deinonychus… you might not be the psycho-killer of my imagination, but you’re still cool to me.

 Originally posted at

Image credits:
Naked creepy Deinonychus: By Mistvan (Own work) [GFDL ( via Wikimedia Commons

Fluffy Deinonychus: By Peng 6 July 2005 16:32 (UTC) (selbst gemacht –Peng 6 July 2005 16:32 (UTC)) [GFDL ( via Wikimedia Commons

Why are we ‘Looking for Aliens’?

The idea that there might be alien life elsewhere in the universe has captured the imaginations of generations of scientists, writers, artists and….well pretty much everyone! Science Brainwaves has a fantastic *free* lecture coming up on Friday 8th November, where Dr Simon Goodwin will describe how astronomers are looking for life on other planets, and what it might be like. So without giving away too many spoilers I thought it would be the perfect opportunity to find out what got our ancestors thinking about aliens and what we might do if we find them….

A 17th Century illustration of the heliocentric system suggested by Copernicus (by Andreas Cellarius from the Harmonia Macrocosmica ,1660) Picture from Wikipedia

A 17th Century illustration of the heliocentric system suggested by Copernicus (by Andreas Cellarius from the Harmonia Macrocosmica ,1660)
Picture from Wikipedia

It’s difficult to say (or at least difficult for me to say, with my limited resources and time!) when people first started thinking about the possibility of life on other planets. However, it’s fair to say that big astronomical discoveries have probably captured people’s imaginations throughout the ages – in the same way that the moon landing got everyone talking about little green men. One such breakthrough is the ‘Heliocentric Revolution’. Heliocentrism is the concept of the solar system with the sun at the centre instead of the earth, an idea that has been around since at least 3rd century BC. However, it was Copernicus who revived the idea in the 16th Century, which was expanded on by the works of Kepler (who calculated the orbits of the planets) and Galileo (who observed other planets by telescope). The spread of the idea that earth wasn’t the centre of the universe must have made our ancestors wonder what else could be out there. Earth was no longer special, just another planet orbiting the sun, so why shouldn’t there be other life filled planets like ours?


alien contact

Top left: The Voyager Golden Record
Bottom left: The Pioneer Plaque
Right: The Aricebo Message (decoded and coloured)
All pictures are from Wikipedia

So far we’ve obviously not had much luck in finding life, but it’d probably be prudent to think about what we’d do if we do find it – especially if it’s intelligent. Stephen Hawking has been heard to offer an opinion on the subject:

“If aliens visit us, the outcome would be much as when Columbus landed in America, which didn’t turn out well for the Native Americans,”

“We only have to look at ourselves to see how intelligent life might develop into something we wouldn’t want to meet.”

Not the most optimistic of outlooks, but he’s got a point. Several attempts to contact alien life have been made by astronomers, but have they given away too much information? In 1973 the ‘Pioneer Plaque’ was sent out on the pioneer 10 and 11 spacecraft, followed in 1974 by the broadcast of the ‘Arecibo Message’ (both pictured right). A slightly more artistic message was sent out in 1977 on the ‘Voyager Golden Record’, which contained information on the sights and sounds of earth. It’s quite romantic to think that if there messages reached intelligent alien life that they might just pop in for a cuppa to say ‘hi’, but the consequences could be a lot worse if the aliens were hostile (and if you’ve got a flair for the melodramatic).

As a microbiologist I can’t help but be a little cynical about grand ideas of intelligent life. At the moment we’ll probably be lucky to find some basic single celled life – which I’ve heard doesn’t tend to be all that talkative (but which as a microbiologist I would find much more exciting anyway!). Anyway, who am I to say what we may or may not find (with all the experience of a 3rd year astrobiology module) – come and hear it from the expert at Science Brainwaves’ free Looking for Aliens Lecture!*


*did I mention it’s free? :P